Class VariationalEquation
secondary equations
to
compute the global Jacobian matrices with respect to the initial state
vector and, if any, to some parameters of the primary ODE set.
The primary set of ODE for which Jaobian matrices are requested may be:
- a full-fledged
ODEJacobiansProvider
that computes by itself both the ODE and its local partial derivatives, - a simple
OrdinaryDifferentialEquation
which must therefore be completed with a finite differences configuration to compute local partial derivatives (so-called internal differentiation).
As the variational equation automatically inserts secondary differential
equations
, in the expandable ODE
, data for
initial state must also be inserted before integration and matrices
result must be extracted after integration. This implies a precise
scheduling of the calls to the various methods of this class. The
proper scheduling is the following one:
// set up equations ODEJacobiansProvider jode = new MyODE(...); ExpandableODE expandable = new Expandable(jode); VariationalEquation ve = new VariationalEquation(expandable, jode); // set up initial state ODEState initWithoutDerivatives = new ODEState(t0, y0); ve.setInitialMainStateJacobian(dYdY0); // only needed if the default identity matrix is not suitable ve.setInitialParameterJacobian(name, dYdP); // only needed if the default zero matrix is not suitable ODEState initWithDerivatives = ve.setUpInitialState(initWithoutDerivatives); // perform integration on the expanded equations with the expanded initial state ODEStateAndDerivative finalState = integrator.integrate(expandable, initWithDerivatives, finalT); // extract Jacobian matrices dYdY0 = ve.extractMainSetJacobian(finalState); dYdP = ve.extractParameterJacobian(finalState, name);
The most important part is to not forget to call setUpInitialState(ODEState)
to add
the secondary state with the initial matrices to the ODEState
used in the
integrate
method.
Forgetting to do this and passing only a ODEState
without the secondary state
set up will trigger an error as the state vector will not have the correct dimension.
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Nested Class Summary
Modifier and TypeClassDescriptionstatic class
Special exception for equations mismatch. -
Constructor Summary
ConstructorDescriptionVariationalEquation
(ExpandableODE expandable, ODEJacobiansProvider jode) Build variational equation using analytical local partial derivatives.VariationalEquation
(ExpandableODE expandable, OrdinaryDifferentialEquation ode, double[] hY, ParametersController controller, ParameterConfiguration... paramsAndSteps) Build variational equation using finite differences for local partial derivatives. -
Method Summary
Modifier and TypeMethodDescriptiondouble[][]
extractMainSetJacobian
(ODEState state) Extract the Jacobian matrix with respect to state.double[]
extractParameterJacobian
(ODEState state, String pName) Extract the Jacobian matrix with respect to one parameter.void
setInitialMainStateJacobian
(double[][] dYdY0) Set the initial value of the Jacobian matrix with respect to state.void
setInitialParameterJacobian
(String pName, double[] dYdP) Set the initial value of a column of the Jacobian matrix with respect to one parameter.setUpInitialState
(ODEState initialState) Set up initial state.
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Constructor Details
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VariationalEquation
public VariationalEquation(ExpandableODE expandable, OrdinaryDifferentialEquation ode, double[] hY, ParametersController controller, ParameterConfiguration... paramsAndSteps) throws VariationalEquation.MismatchedEquations Build variational equation using finite differences for local partial derivatives.- Parameters:
expandable
- expandable set into which variational equations should be registeredode
- base ordinary differential equation for which Jacobians matrices are requestedhY
- step used for finite difference computation with respect to state vectorcontroller
- controller to change parametersparamsAndSteps
- parameters and steps to compute the Jacobians df/dp- Throws:
VariationalEquation.MismatchedEquations
- if the primary set of the expandable set does not match theode
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VariationalEquation
public VariationalEquation(ExpandableODE expandable, ODEJacobiansProvider jode) throws VariationalEquation.MismatchedEquations Build variational equation using analytical local partial derivatives.Parameters must belong to the supported ones given by
Parameterizable.getParametersNames()
, so the primary set of differential equations must beParameterizable
.Note that each selection clears the previous selected parameters.
- Parameters:
expandable
- expandable set into which variational equations should be registeredjode
- the primary first order differential equations set to extend- Throws:
VariationalEquation.MismatchedEquations
- if the primary set of the expandable set does not match theode
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Method Details
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setInitialMainStateJacobian
Set the initial value of the Jacobian matrix with respect to state.If this method is not called, the initial value of the Jacobian matrix with respect to state is set to identity.
This method must be called before
setUpInitialState(ODEState)
- Parameters:
dYdY0
- initial Jacobian matrix w.r.t. state- Throws:
MathIllegalArgumentException
- if matrix dimensions are incorrect
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setInitialParameterJacobian
public void setInitialParameterJacobian(String pName, double[] dYdP) throws MathIllegalArgumentException Set the initial value of a column of the Jacobian matrix with respect to one parameter.If this method is not called for some parameter, the initial value of the column of the Jacobian matrix with respect to this parameter is set to zero.
This method must be called before
setUpInitialState(ODEState)
- Parameters:
pName
- parameter namedYdP
- initial Jacobian column vector with respect to the parameter- Throws:
MathIllegalArgumentException
- if a parameter is not supportedMathIllegalArgumentException
- if the column vector does not match state dimension
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setUpInitialState
Set up initial state.This method inserts the initial Jacobian matrices data into an
ODE state
by overriding the additional state components corresponding to the instance. It must be called prior to integrate the equations.This method must be called after
setInitialMainStateJacobian(double[][])
andsetInitialParameterJacobian(String, double[])
.- Parameters:
initialState
- initial state, without the initial Jacobians matrices- Returns:
- a new instance of initial state, with the initial Jacobians matrices properly initialized
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extractMainSetJacobian
Extract the Jacobian matrix with respect to state.- Parameters:
state
- state from which to extract Jacobian matrix- Returns:
- Jacobian matrix dY/dY0 with respect to state.
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extractParameterJacobian
Extract the Jacobian matrix with respect to one parameter.- Parameters:
state
- state from which to extract Jacobian matrixpName
- name of the parameter for the computed Jacobian matrix- Returns:
- Jacobian matrix dY/dP with respect to the named parameter
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