Class JacobianMatrices
secondary equations
to
compute the Jacobian matrices with respect to the initial state vector and, if
any, to some parameters of the primary ODE set.
It is intended to be packed into an ExpandableODE
in conjunction with a primary set of ODE, which may be:
In order to compute Jacobian matrices with respect to some parameters of the primary ODE set, the following parameter Jacobian providers may be set:
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Nested Class Summary
Modifier and TypeClassDescriptionstatic class
Deprecated.Special exception for equations mismatch. -
Constructor Summary
ConstructorDescriptionJacobianMatrices
(MainStateJacobianProvider jode, String... parameters) Deprecated.Simple constructor for a secondary equations set computing Jacobian matrices.JacobianMatrices
(OrdinaryDifferentialEquation fode, double[] hY, String... parameters) Deprecated.Simple constructor for a secondary equations set computing Jacobian matrices. -
Method Summary
Modifier and TypeMethodDescriptionvoid
Deprecated.Add a parameter Jacobian provider.double[][]
extractMainSetJacobian
(ODEState state) Deprecated.Extract the Jacobian matrix with respect to state.double[]
extractParameterJacobian
(ODEState state, String pName) Deprecated.Extract the Jacobian matrix with respect to one parameter.void
registerVariationalEquations
(ExpandableODE expandable) Deprecated.Register the variational equations for the Jacobians matrices to the expandable set.void
setInitialMainStateJacobian
(double[][] dYdY0) Deprecated.Set the initial value of the Jacobian matrix with respect to state.void
setInitialParameterJacobian
(String pName, double[] dYdP) Deprecated.Set the initial value of a column of the Jacobian matrix with respect to one parameter.void
Deprecated.as of 1.0, replaced withsetParametersController(ParametersController)
void
setParametersController
(ParametersController parametersController) Deprecated.Set a parameter Jacobian provider.void
setParameterStep
(String parameter, double hP) Deprecated.Set the step associated to a parameter in order to compute by finite difference the Jacobian matrix.setUpInitialState
(ODEState initialState) Deprecated.Set up initial state.
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Constructor Details
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JacobianMatrices
public JacobianMatrices(OrdinaryDifferentialEquation fode, double[] hY, String... parameters) throws MathIllegalArgumentException Deprecated.Simple constructor for a secondary equations set computing Jacobian matrices.Parameters must belong to the supported ones given by
Parameterizable.getParametersNames()
, so the primary set of differential equations must beParameterizable
.Note that each selection clears the previous selected parameters.
- Parameters:
fode
- the primary first order differential equations set to extendhY
- step used for finite difference computation with respect to state vectorparameters
- parameters to consider for Jacobian matrices processing (may be null if parameters Jacobians is not desired)- Throws:
MathIllegalArgumentException
- if there is a dimension mismatch between the steps arrayhY
and the equation dimension
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JacobianMatrices
Deprecated.Simple constructor for a secondary equations set computing Jacobian matrices.Parameters must belong to the supported ones given by
Parameterizable.getParametersNames()
, so the primary set of differential equations must beParameterizable
.Note that each selection clears the previous selected parameters.
- Parameters:
jode
- the primary first order differential equations set to extendparameters
- parameters to consider for Jacobian matrices processing (may be null if parameters Jacobians is not desired)
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Method Details
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registerVariationalEquations
public void registerVariationalEquations(ExpandableODE expandable) throws MathIllegalArgumentException, JacobianMatrices.MismatchedEquations Deprecated.Register the variational equations for the Jacobians matrices to the expandable set.This method must be called before
setUpInitialState(ODEState)
- Parameters:
expandable
- expandable set into which variational equations should be registered- Throws:
MathIllegalArgumentException
- if the dimension of the partial state does not match the selected equations set dimensionJacobianMatrices.MismatchedEquations
- if the primary set of the expandable set does not match the one used to build the instance- See Also:
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setUpInitialState
Deprecated.Set up initial state.This method inserts the initial Jacobian matrices data into an
ODE state
by overriding the additional state components corresponding to the instance. It must be called prior to integrate the equations.This method must be called after
registerVariationalEquations(ExpandableODE)
,setInitialMainStateJacobian(double[][])
andsetInitialParameterJacobian(String, double[])
.- Parameters:
initialState
- initial state, without the initial Jacobians matrices- Returns:
- a new instance of initial state, with the initial Jacobians matrices properly initialized
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addParameterJacobianProvider
Deprecated.Add a parameter Jacobian provider.- Parameters:
provider
- the parameter Jacobian provider to compute exactly the parameter Jacobian matrix
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setParameterizedODE
Deprecated.as of 1.0, replaced withsetParametersController(ParametersController)
Set a parameter Jacobian provider.- Parameters:
pc
- the controller to compute the parameter Jacobian matrix using finite differences
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setParametersController
Deprecated.Set a parameter Jacobian provider.- Parameters:
parametersController
- the controller to compute the parameter Jacobian matrix using finite differences
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setParameterStep
Deprecated.Set the step associated to a parameter in order to compute by finite difference the Jacobian matrix.Needed if and only if the primary ODE set is a
ParametersController
.Given a non zero parameter value pval for the parameter, a reasonable value for such a step is
pval * FastMath.sqrt(Precision.EPSILON)
.A zero value for such a step doesn't enable to compute the parameter Jacobian matrix.
- Parameters:
parameter
- parameter to consider for Jacobian processinghP
- step for Jacobian finite difference computation w.r.t. the specified parameter- Throws:
MathIllegalArgumentException
- if the parameter is not supported- See Also:
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setInitialMainStateJacobian
Deprecated.Set the initial value of the Jacobian matrix with respect to state.If this method is not called, the initial value of the Jacobian matrix with respect to state is set to identity.
This method must be called before
setUpInitialState(ODEState)
- Parameters:
dYdY0
- initial Jacobian matrix w.r.t. state- Throws:
MathIllegalArgumentException
- if matrix dimensions are incorrect
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setInitialParameterJacobian
public void setInitialParameterJacobian(String pName, double[] dYdP) throws MathIllegalArgumentException Deprecated.Set the initial value of a column of the Jacobian matrix with respect to one parameter.If this method is not called for some parameter, the initial value of the column of the Jacobian matrix with respect to this parameter is set to zero.
This method must be called before
setUpInitialState(ODEState)
- Parameters:
pName
- parameter namedYdP
- initial Jacobian column vector with respect to the parameter- Throws:
MathIllegalArgumentException
- if a parameter is not supportedMathIllegalArgumentException
- if the column vector does not match state dimension
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extractMainSetJacobian
Deprecated.Extract the Jacobian matrix with respect to state.- Parameters:
state
- state from which to extract Jacobian matrix- Returns:
- Jacobian matrix dY/dY0 with respect to state.
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extractParameterJacobian
Deprecated.Extract the Jacobian matrix with respect to one parameter.- Parameters:
state
- state from which to extract Jacobian matrixpName
- name of the parameter for the computed Jacobian matrix- Returns:
- Jacobian matrix dY/dP with respect to the named parameter
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VariationalEquation